Also, do not repeat warnings as errors in GUIs and during instrumentation.

 - links to footnotes were fixed by deferring the loading of hyperref until
   after footmisc.
 - some cross-document links were wrong

* Created a method for updating all warning indicators next to the Tab names
* Corrected behavior when the FIUs indicator is on and the causing FIU is deleted

* Segfault when deselecting all nets
* When a net entry was empty (" "), the user first had to de-select this net

New feature branch: allow selection of multiple nets in FIU tab. Automatically creates FIUs for selected nets

The correct full command line should have been:

find * -type f \( -name "*.pm" -or -name "*.pl" -or -name "*.tst" -or -name "*.cfg" -or -name "*.vhd" -or -name "*.psl" -or -name "*.do" \) -print0 | parallel -q -0 sed -i -e 's/FAULT_DETECT_/FD_/g;s/RESET_/RST_/g;s/TRIGGER_/TRIG_/g;s/INSTRUMENTATION_/INST_/g;s/IMPLEMENTATION_/IMPL_/g;s/_DURATION/_DUR/g;s/_ACTIVE/_ACT/g;s/_CONFIG/_CFG/g;s/OPTIMIZATION_OFF/OPT_OFF/g;s/s_fiji_trigger_/s_fiji_trig_/g'

Also, change cross-document reference to look for the "other" pdf
file in the current directory instead of ../dir-name/

And some other minor refinements